HL_9D0G_066

3D structure

PDB id

9D0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D0G_066 not in the Motif Atlas

Geometric match to HL_7KKV_001

Geometric discrepancy: 0.0555

The information below is about HL_7KKV_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9D0G|1|1A|C|2856
9D0G|1|1A|G|2857
9D0G|1|1A|C|2858
9D0G|1|1A|G|2859
9D0G|1|1A|A|2860
9D0G|1|1A|G|2861

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1T

50S ribosomal protein L19