HL_9D0I_023

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

9D0I|1|1A|U|827, 9D0I|1|1A|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D0I_023 not in the Motif Atlas

Geometric match to HL_8B0X_055

Geometric discrepancy: 0.0609

The information below is about HL_8B0X_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

9D0I|1|1A|U|826
9D0I|1|1A|U|827
9D0I|1|1A|U|828
9D0I|1|1A|A|829
9D0I|1|1A|G|830
9D0I|1|1A|G|831

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1P

50S ribosomal protein L15