HL_9D0I_039

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

9D0I|1|1A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D0I_039 not in the Motif Atlas

Geometric match to HL_9DFE_039

Geometric discrepancy: 0.0762

The information below is about HL_9DFE_039

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9D0I|1|1A|C|1631
9D0I|1|1A|A|1631|||A
9D0I|1|1A|A|1632
9D0I|1|1A|G|1633
9D0I|1|1A|A|1634
9D0I|1|1A|G|1635

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains