HL_9D0I_064

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9D0I|1|1A|G|2751, 9D0I|1|1A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D0I_064 not in the Motif Atlas

Geometric match to HL_9DFE_064

Geometric discrepancy: 0.0538

The information below is about HL_9DFE_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

9D0I|1|1A|C|2745
9D0I|1|1A|U|2746
9D0I|1|1A|G|2747
9D0I|1|1A|A|2748
9D0I|1|1A|A|2749
9D0I|1|1A|A|2750
9D0I|1|1A|G|2751
9D0I|1|1A|C|2752
9D0I|1|1A|A|2753
9D0I|1|1A|U|2754
9D0I|1|1A|C|2755
9D0I|1|1A|U|2756
9D0I|1|1A|A|2757
9D0I|1|1A|A|2758
9D0I|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6