HL_9D0I_157

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D0I_157 not in the Motif Atlas

Geometric match to HL_9DFE_198

Geometric discrepancy: 0.1202

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9D0I|1|2A|G|2304
9D0I|1|2A|A|2305
9D0I|1|2A|C|2306
9D0I|1|2A|G|2307
9D0I|1|2A|G|2308
9D0I|1|2A|A|2309
9D0I|1|2A|A|2310
9D0I|1|2A|A|2311
9D0I|1|2A|U|2312

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2G

50S ribosomal protein L5