HL_9D7R_024

3D structure

PDB id

9D7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Fva1 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

9D7R|1|1A|A|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7R_024 not in the Motif Atlas

Homologous match to HL_9DFE_024

Geometric discrepancy: 0.4844

The information below is about HL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9D7R|1|1A|C|884
9D7R|1|1A|C|885
9D7R|1|1A|C|886
9D7R|1|1A|A|887
9D7R|1|1A|C|888
9D7R|1|1A|C|889
9D7R|1|1A|A|890
9D7R|1|1A|G|892

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13