HL_9D7R_064
3D structure
- PDB id
- 9D7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Fva1 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9D7R|1|1A|G|2751, 9D7R|1|1A|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D7R_064 not in the Motif Atlas
- Homologous match to HL_9DFE_064
- Geometric discrepancy: 0.06
- The information below is about HL_9DFE_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.1
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 11
Unit IDs
9D7R|1|1A|C|2745
9D7R|1|1A|U|2746
9D7R|1|1A|G|2747
9D7R|1|1A|A|2748
9D7R|1|1A|A|2749
9D7R|1|1A|A|2750
9D7R|1|1A|G|2751
9D7R|1|1A|C|2752
9D7R|1|1A|A|2753
9D7R|1|1A|U|2754
9D7R|1|1A|C|2755
9D7R|1|1A|U|2756
9D7R|1|1A|A|2757
9D7R|1|1A|A|2758
9D7R|1|1A|G|2759
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1H
- 50S ribosomal protein L6
- Chain 1N
- 50S ribosomal protein L13
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