HL_9D7S_006

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

9D7S|1|1A|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7S_006 not in the Motif Atlas

Homologous match to HL_9DFE_006

Geometric discrepancy: 0.1453

The information below is about HL_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

9D7S|1|1A|A|225
9D7S|1|1A|G|226
9D7S|1|1A|A|227
9D7S|1|1A|A|228
9D7S|1|1A|A|229
9D7S|1|1A|U|230

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15