HL_9D7S_060

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7S_060 not in the Motif Atlas

Homologous match to HL_9DFE_060

Geometric discrepancy: 0.0871

The information below is about HL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9D7S|1|1A|C|2551
9D7S|1|1A|OMU|2552
9D7S|1|1A|G|2553
9D7S|1|1A|U|2554
9D7S|1|1A|U|2555
9D7S|1|1A|C|2556
9D7S|1|1A|G|2557

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1w

Peptide chain release factor 1