HL_9D7S_064

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9D7S|1|1A|G|2751, 9D7S|1|1A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7S_064 not in the Motif Atlas

Homologous match to HL_9DFE_064

Geometric discrepancy: 0.0691

The information below is about HL_9DFE_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9D7S|1|1A|C|2745
9D7S|1|1A|U|2746
9D7S|1|1A|G|2747
9D7S|1|1A|A|2748
9D7S|1|1A|A|2749
9D7S|1|1A|A|2750
9D7S|1|1A|G|2751
9D7S|1|1A|C|2752
9D7S|1|1A|A|2753
9D7S|1|1A|U|2754
9D7S|1|1A|C|2755
9D7S|1|1A|U|2756
9D7S|1|1A|A|2757
9D7S|1|1A|A|2758
9D7S|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13