HL_9D7S_104
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- 9D7S|1|1y|U|33
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D7S_104 not in the Motif Atlas
- Homologous match to HL_4YCP_002
- Geometric discrepancy: 0.3276
- The information below is about HL_4YCP_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9D7S|1|1y|A|31
9D7S|1|1y|PSU|32
9D7S|1|1y|U|33
9D7S|1|1y|G|34
9D7S|1|1y|A|35
9D7S|1|1y|A|36
9D7S|1|1y|MIA|37
9D7S|1|1y|A|38
9D7S|1|1y|PSU|39
Current chains
- Chain 1y
- P-site and E-site Deacylated tRNAphe
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1g
- 30S ribosomal protein S7
- Chain 1k
- 30S ribosomal protein S11
- Chain 1v
- PHE-Stop mRNA
- Chain 1x
- Transfer RNA; tRNA
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