HL_9D7S_116

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

9D7S|1|2A|G|329, 9D7S|1|2A|A|330, 9D7S|1|2A|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7S_116 not in the Motif Atlas

Homologous match to HL_9DFE_011

Geometric discrepancy: 0.0998

The information below is about HL_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9D7S|1|2A|G|327
9D7S|1|2A|U|328
9D7S|1|2A|G|329
9D7S|1|2A|A|330
9D7S|1|2A|A|331
9D7S|1|2A|A|332
9D7S|1|2A|G|333
9D7S|1|2A|C|334
9D7S|1|2A|C|335

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24