HL_9D7S_125

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGUGAGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7S_125 not in the Motif Atlas

Homologous match to HL_9DFE_020

Geometric discrepancy: 0.1004

The information below is about HL_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9D7S|1|2A|G|712
9D7S|1|2A|G|713
9D7S|1|2A|U|714
9D7S|1|2A|G|715
9D7S|1|2A|A|716
9D7S|1|2A|G|717
9D7S|1|2A|A|718
9D7S|1|2A|C|719

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17