HL_9D7S_129

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGCCCACCAGCC

Length

12 nucleotides

Bulged bases

9D7S|1|2A|C|886, 9D7S|1|2A|A|887, 9D7S|1|2A|C|893

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7S|1|2A|G|882
9D7S|1|2A|G|883
9D7S|1|2A|C|884
9D7S|1|2A|C|885
9D7S|1|2A|C|886
9D7S|1|2A|A|887
9D7S|1|2A|C|888
9D7S|1|2A|C|889
9D7S|1|2A|A|890
9D7S|1|2A|G|892
9D7S|1|2A|C|893
9D7S|1|2A|C|894

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13