HL_9D7S_130

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

9D7S|1|2A|U|958, 9D7S|1|2A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7S_130 not in the Motif Atlas

Homologous match to HL_9DFE_025

Geometric discrepancy: 0.0913

The information below is about HL_9DFE_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9D7S|1|2A|C|955
9D7S|1|2A|G|956
9D7S|1|2A|A|957
9D7S|1|2A|U|958
9D7S|1|2A|A|959
9D7S|1|2A|A|960
9D7S|1|2A|C|961
9D7S|1|2A|G|962

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2Q

50S ribosomal protein L16