HL_9D7S_160

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7S_160 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1569

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9D7S|1|2A|C|2471
9D7S|1|2A|G|2472
9D7S|1|2A|U|2473
9D7S|1|2A|C|2474
9D7S|1|2A|C|2475
9D7S|1|2A|A|2476
9D7S|1|2A|C|2477
9D7S|1|2A|A|2478
9D7S|1|2A|G|2479

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2Q

50S ribosomal protein L16