HL_9D7T_077

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UCCUACGGGA

Length

10 nucleotides

Bulged bases

9D7T|1|1a|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7T|1|1a|U|340
9D7T|1|1a|C|341
9D7T|1|1a|C|342
9D7T|1|1a|U|343
9D7T|1|1a|A|344
9D7T|1|1a|C|345
9D7T|1|1a|G|346
9D7T|1|1a|G|347
9D7T|1|1a|G|348
9D7T|1|1a|A|349

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1O

50S ribosomal protein L14

Chain 1T

50S ribosomal protein L19

Chain 1t

30S ribosomal protein S20