HL_9D7T_133

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7T_133 not in the Motif Atlas

Homologous match to HL_9DFE_031

Geometric discrepancy: 0.0844

The information below is about HL_9DFE_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

9D7T|1|2A|G|1281
9D7T|1|2A|U|1282
9D7T|1|2A|G|1283
9D7T|1|2A|A|1284
9D7T|1|2A|G|1285
9D7T|1|2A|A|1286
9D7T|1|2A|A|1287
9D7T|1|2A|U|1288
9D7T|1|2A|C|1289

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17

Chain 2W

50S ribosomal protein L22