HL_9D9O_001

3D structure

PDB id

9D9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CVB3 replication-linked RNA stem-loop D in complex with 3C protein

Experimental method

X-RAY DIFFRACTION

Resolution

2.41 Å

Loop

Sequence

UCACGG

Length

6 nucleotides

Bulged bases

9D9O|1|R|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

9D9O|1|R|U|62
9D9O|1|R|C|63
9D9O|1|R|A|64
9D9O|1|R|C|65
9D9O|1|R|G|66
9D9O|1|R|G|67

Current chains

Chain R

RNA (36-MER)

Nearby chains

Chain A

Protease 3C

Chain B

Protease 3C