HL_9DFC_024

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGCCCACCAGCC

Length

12 nucleotides

Bulged bases

9DFC|1|1A|C|885

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFC|1|1A|G|882
9DFC|1|1A|G|883
9DFC|1|1A|C|884
9DFC|1|1A|C|885
9DFC|1|1A|C|886
9DFC|1|1A|A|887
9DFC|1|1A|C|888
9DFC|1|1A|C|889
9DFC|1|1A|A|890
9DFC|1|1A|G|892
9DFC|1|1A|C|893
9DFC|1|1A|C|894

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1w

Transfer RNA; tRNA