HL_9DFC_027

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9DFC|1|1A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFC_027 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4027

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9DFC|1|1A|C|1064
9DFC|1|1A|U|1065
9DFC|1|1A|U|1066
9DFC|1|1A|A|1067
9DFC|1|1A|G|1068
9DFC|1|1A|A|1069
9DFC|1|1A|A|1070
9DFC|1|1A|G|1071
9DFC|1|1A|C|1072
9DFC|1|1A|A|1073
9DFC|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains