HL_9DFC_034

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9DFC|1|1A|U|1396, 9DFC|1|1A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFC_034 not in the Motif Atlas

Homologous match to HL_9DFE_034

Geometric discrepancy: 0.075

The information below is about HL_9DFE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9DFC|1|1A|G|1389
9DFC|1|1A|U|1390
9DFC|1|1A|U|1391
9DFC|1|1A|A|1392
9DFC|1|1A|A|1393
9DFC|1|1A|U|1394
9DFC|1|1A|A|1395
9DFC|1|1A|U|1396
9DFC|1|1A|U|1397
9DFC|1|1A|C|1398

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23