HL_9DFC_049

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

9DFC|1|1A|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFC_049 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.3123

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

9DFC|1|1A|C|2143
9DFC|1|1A|U|2144
9DFC|1|1A|C|2145
9DFC|1|1A|C|2146
9DFC|1|1A|G|2147
9DFC|1|1A|G|2148

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1k

30S ribosomal protein S11