HL_9DFC_118

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

9DFC|1|2A|G|329, 9DFC|1|2A|A|330, 9DFC|1|2A|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFC_118 not in the Motif Atlas

Homologous match to HL_9DFE_011

Geometric discrepancy: 0.0936

The information below is about HL_9DFE_011

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

9DFC|1|2A|G|327
9DFC|1|2A|U|328
9DFC|1|2A|G|329
9DFC|1|2A|A|330
9DFC|1|2A|A|331
9DFC|1|2A|A|332
9DFC|1|2A|G|333
9DFC|1|2A|C|334
9DFC|1|2A|C|335

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24