HL_9DFC_131

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCUAGGGGGCCCACCAGCCUACCAAAC

Length

27 nucleotides

Bulged bases

9DFC|1|2A|C|893, 9DFC|1|2A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFC|1|2A|G|875
9DFC|1|2A|C|876
9DFC|1|2A|U|877
9DFC|1|2A|A|878
9DFC|1|2A|G|879
9DFC|1|2A|G|880
9DFC|1|2A|G|881
9DFC|1|2A|G|882
9DFC|1|2A|G|883
9DFC|1|2A|C|884
9DFC|1|2A|C|885
9DFC|1|2A|C|886
9DFC|1|2A|A|887
9DFC|1|2A|C|888
9DFC|1|2A|C|889
9DFC|1|2A|A|890
9DFC|1|2A|G|892
9DFC|1|2A|C|893
9DFC|1|2A|C|894
9DFC|1|2A|U|895
9DFC|1|2A|A|896
9DFC|1|2A|C|897
9DFC|1|2A|C|898
9DFC|1|2A|A|899
9DFC|1|2A|A|900
9DFC|1|2A|A|901
9DFC|1|2A|C|902

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25

Chain 2m

30S ribosomal protein S13

Chain 2w

Transfer RNA; tRNA