HL_9DFC_168

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9DFC|1|2A|G|2751, 9DFC|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFC_168 not in the Motif Atlas

Homologous match to HL_9DFE_064

Geometric discrepancy: 0.1738

The information below is about HL_9DFE_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9DFC|1|2A|C|2745
9DFC|1|2A|U|2746
9DFC|1|2A|G|2747
9DFC|1|2A|A|2748
9DFC|1|2A|A|2749
9DFC|1|2A|A|2750
9DFC|1|2A|G|2751
9DFC|1|2A|C|2752
9DFC|1|2A|A|2753
9DFC|1|2A|U|2754
9DFC|1|2A|C|2755
9DFC|1|2A|U|2756
9DFC|1|2A|A|2757
9DFC|1|2A|A|2758
9DFC|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13