HL_9DFC_174

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

9DFC|1|2a|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFC_174 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.0648

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9DFC|1|2a|U|12
9DFC|1|2a|U|13
9DFC|1|2a|U|14
9DFC|1|2a|G|15
9DFC|1|2a|A|16
9DFC|1|2a|U|17
9DFC|1|2a|C|18
9DFC|1|2a|C|19
9DFC|1|2a|U|20
9DFC|1|2a|G|21
9DFC|1|2a|G|22

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2e

30S ribosomal protein S5

Chain 2v

MET-PHE-mRNA