HL_9DFD_029

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

9DFD|1|1A|U|1175, 9DFD|1|1A|A|1177

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFD_029 not in the Motif Atlas

Homologous match to HL_9DFE_029

Geometric discrepancy: 0.4449

The information below is about HL_9DFE_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFD|1|1A|G|1171
9DFD|1|1A|G|1173
9DFD|1|1A|A|1174
9DFD|1|1A|U|1175
9DFD|1|1A|G|1176
9DFD|1|1A|A|1177
9DFD|1|1A|C|1178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains