HL_9DFD_053

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFD_053 not in the Motif Atlas

Homologous match to HL_9DFE_053

Geometric discrepancy: 0.0915

The information below is about HL_9DFE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFD|1|1A|G|2303
9DFD|1|1A|G|2304
9DFD|1|1A|A|2305
9DFD|1|1A|C|2306
9DFD|1|1A|G|2307
9DFD|1|1A|G|2308
9DFD|1|1A|A|2309
9DFD|1|1A|A|2310
9DFD|1|1A|A|2311
9DFD|1|1A|U|2312
9DFD|1|1A|C|2313

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1G

50S ribosomal protein L5