HL_9DFD_073

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

9DFD|1|1a|U|202, 9DFD|1|1a|U|204

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFD_073 not in the Motif Atlas

Homologous match to HL_6CZR_234

Geometric discrepancy: 0.5057

The information below is about HL_6CZR_234

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

9DFD|1|1a|C|201
9DFD|1|1a|U|202
9DFD|1|1a|U|203
9DFD|1|1a|U|204
9DFD|1|1a|G|216

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains