HL_9DFD_091

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

9DFD|1|1a|C|1030|||B, 9DFD|1|1a|G|1030|||C, 9DFD|1|1a|A|1030|||D

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFD_091 not in the Motif Atlas

Homologous match to HL_6CZR_235

Geometric discrepancy: 0.4582

The information below is about HL_6CZR_235

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFD|1|1a|C|1030
9DFD|1|1a|G|1030|||A
9DFD|1|1a|C|1030|||B
9DFD|1|1a|G|1030|||C
9DFD|1|1a|A|1030|||D
9DFD|1|1a|G|1031

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains