HL_9DFD_131

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCUAGGGGGCCCACCAGCCUACCAAAC

Length

27 nucleotides

Bulged bases

9DFD|1|2A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFD|1|2A|G|875
9DFD|1|2A|C|876
9DFD|1|2A|U|877
9DFD|1|2A|A|878
9DFD|1|2A|G|879
9DFD|1|2A|G|880
9DFD|1|2A|G|881
9DFD|1|2A|G|882
9DFD|1|2A|G|883
9DFD|1|2A|C|884
9DFD|1|2A|C|885
9DFD|1|2A|C|886
9DFD|1|2A|A|887
9DFD|1|2A|C|888
9DFD|1|2A|C|889
9DFD|1|2A|A|890
9DFD|1|2A|G|892
9DFD|1|2A|C|893
9DFD|1|2A|C|894
9DFD|1|2A|U|895
9DFD|1|2A|A|896
9DFD|1|2A|C|897
9DFD|1|2A|C|898
9DFD|1|2A|A|899
9DFD|1|2A|A|900
9DFD|1|2A|A|901
9DFD|1|2A|C|902

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25

Chain 2m

30S ribosomal protein S13

Chain 2w

Transfer RNA; tRNA