HL_9DFD_161

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

9DFD|1|2A|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFD_161 not in the Motif Atlas

Homologous match to HL_9DFE_057

Geometric discrepancy: 0.074

The information below is about HL_9DFE_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9DFD|1|2A|C|2404
9DFD|1|2A|G|2405
9DFD|1|2A|U|2406
9DFD|1|2A|G|2407
9DFD|1|2A|U|2408
9DFD|1|2A|G|2409
9DFD|1|2A|G|2410
9DFD|1|2A|A|2411
9DFD|1|2A|A|2412
9DFD|1|2A|G|2413

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15