HL_9DFD_168

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9DFD|1|2A|G|2751, 9DFD|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFD_168 not in the Motif Atlas

Homologous match to HL_9DFE_064

Geometric discrepancy: 0.1838

The information below is about HL_9DFE_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

9DFD|1|2A|C|2745
9DFD|1|2A|U|2746
9DFD|1|2A|G|2747
9DFD|1|2A|A|2748
9DFD|1|2A|A|2749
9DFD|1|2A|A|2750
9DFD|1|2A|G|2751
9DFD|1|2A|C|2752
9DFD|1|2A|A|2753
9DFD|1|2A|U|2754
9DFD|1|2A|C|2755
9DFD|1|2A|U|2756
9DFD|1|2A|A|2757
9DFD|1|2A|A|2758
9DFD|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13