HL_9DFD_198

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

9DFD|1|2a|U|1136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFD_198 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2609

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

9DFD|1|2a|G|1134
9DFD|1|2a|U|1135
9DFD|1|2a|U|1136
9DFD|1|2a|C|1137
9DFD|1|2a|G|1138
9DFD|1|2a|G|1139
9DFD|1|2a|C|1140

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains