HL_9DN4_002

3D structure

PDB id

9DN4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a SARS-CoV-2 20-mer RNA in complex with FAB BL3-6S97N

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

GAAACAC

Length

7 nucleotides

Bulged bases

9DN4|1|F|A|9, 9DN4|1|F|A|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22584.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

26

Unit IDs

9DN4|1|F|G|8
9DN4|1|F|A|9
9DN4|1|F|A|10
9DN4|1|F|A|11
9DN4|1|F|C|12
9DN4|1|F|A|13
9DN4|1|F|C|14

Current chains

Chain F

RNA (5'-R(P*CP*UP*CP*GP*UP*CP*UP*GP*AP*AP*AP*CP*AP*CP*GP*GP*AP*GP*AP*G)-3')

Nearby chains

Chain C

FAB BL3-6S97N LIGHT CHAIN

Chain D

FAB BL3-6S97N HEAVY CHAIN