HL_9DOU_002

3D structure

PDB id

9DOU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Taeniopygia guttata R2 retrotransposon (R2Tg) initiating target-primed reverse transcription

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAAUUUAU

Length

9 nucleotides

Bulged bases

9DOU|1|R|A|305, 9DOU|1|R|U|307, 9DOU|1|R|U|309

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOU|1|R|A|303
9DOU|1|R|U|304
9DOU|1|R|A|305
9DOU|1|R|A|306
9DOU|1|R|U|307
9DOU|1|R|U|308
9DOU|1|R|U|309
9DOU|1|R|A|310
9DOU|1|R|U|311

Current chains

Chain R

R2Tg 3'UTR RNA

Nearby chains