HL_9DP7_033
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GCCUGAUUUUAUGCAGGC
- Length
- 18 nucleotides
- Bulged bases
- 9DP7|1|A1|U|1568, 9DP7|1|A1|U|1569
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|G|1561
9DP7|1|A1|C|1562
9DP7|1|A1|C|1563
9DP7|1|A1|U|1564
9DP7|1|A1|G|1565
9DP7|1|A1|A|1566
9DP7|1|A1|U|1567
9DP7|1|A1|U|1568
9DP7|1|A1|U|1569
9DP7|1|A1|U|1570
9DP7|1|A1|A|1571
9DP7|1|A1|U|1572
9DP7|1|A1|G|1573
9DP7|1|A1|C|1574
9DP7|1|A1|A|1575
9DP7|1|A1|G|1576
9DP7|1|A1|G|1577
9DP7|1|A1|C|1578
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- 60S ribosomal protein L8-A
- Chain AX
- 60S ribosomal protein L25
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