HL_9DP7_042

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9DP7|1|A1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DP7_042 not in the Motif Atlas

Homologous match to HL_9AXU_040

Geometric discrepancy: 0.072

The information below is about HL_9AXU_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9DP7|1|A1|C|1923
9DP7|1|A1|U|1924
9DP7|1|A1|U|1925
9DP7|1|A1|C|1926
9DP7|1|A1|G|1927
9DP7|1|A1|G|1928

Current chains

Chain A1

25S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A

Chain Ap

60S ribosomal protein L43-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA