HL_9DP7_045

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

9DP7|1|A1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DP7_045 not in the Motif Atlas

Homologous match to HL_9PN5_045

Geometric discrepancy: 0.0671

The information below is about HL_9PN5_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9DP7|1|A1|A|2164
9DP7|1|A1|G|2165
9DP7|1|A1|A|2166
9DP7|1|A1|A|2167
9DP7|1|A1|A|2168
9DP7|1|A1|G|2169
9DP7|1|A1|U|2170

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AG

60S ribosomal protein L8-A

Chain AN

60S ribosomal protein L15-A