HL_9DP7_048

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9DP7|1|A1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|U|2292
9DP7|1|A1|C|2293
9DP7|1|A1|U|2294
9DP7|1|A1|A|2295
9DP7|1|A1|A|2296
9DP7|1|A1|U|2297
9DP7|1|A1|U|2298
9DP7|1|A1|A|2299
9DP7|1|A1|G|2300

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AV

60S ribosomal protein L23-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA