HL_9DP7_081

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

9DP7|1|B5|C|191, 9DP7|1|B5|U|192, 9DP7|1|B5|U|193, 9DP7|1|B5|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|C|186
9DP7|1|B5|G|187
9DP7|1|B5|A|188
9DP7|1|B5|C|189
9DP7|1|B5|C|190
9DP7|1|B5|C|191
9DP7|1|B5|U|192
9DP7|1|B5|U|193
9DP7|1|B5|U|194
9DP7|1|B5|G|195
9DP7|1|B5|G|196
9DP7|1|B5|A|197
9DP7|1|B5|A|198
9DP7|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A