HL_9DP7_096

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|U|828
9DP7|1|B5|A|829
9DP7|1|B5|U|830
9DP7|1|B5|U|831
9DP7|1|B5|U|832
9DP7|1|B5|U|833
9DP7|1|B5|G|834
9DP7|1|B5|U|835
9DP7|1|B5|U|836
9DP7|1|B5|G|837
9DP7|1|B5|G|838
9DP7|1|B5|U|839
9DP7|1|B5|U|840
9DP7|1|B5|U|841
9DP7|1|B5|C|842
9DP7|1|B5|U|843
9DP7|1|B5|A|844

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BL

40S ribosomal protein S11-A