HL_9DP7_104

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

9DP7|1|B5|G|1243, 9DP7|1|B5|G|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|A|1238
9DP7|1|B5|U|1239
9DP7|1|B5|U|1240
9DP7|1|B5|G|1241
9DP7|1|B5|A|1242
9DP7|1|B5|G|1243
9DP7|1|B5|A|1244
9DP7|1|B5|G|1245
9DP7|1|B5|C|1246
9DP7|1|B5|U|1247

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BP

Small ribosomal subunit protein uS19

Chain Bd

Small ribosomal subunit protein uS14A

Chain Bf

RPS31 isoform 1