HL_9DP7_106

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

9DP7|1|B5|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DP7_106 not in the Motif Atlas

Homologous match to HL_9PN5_104

Geometric discrepancy: 0.143

The information below is about HL_9PN5_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9DP7|1|B5|C|1309
9DP7|1|B5|U|1310
9DP7|1|B5|U|1311
9DP7|1|B5|A|1312
9DP7|1|B5|A|1313
9DP7|1|B5|U|1314
9DP7|1|B5|U|1315
9DP7|1|B5|G|1316

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BR

40S ribosomal protein S17-A