HL_9DP7_115

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UACCAUAGGCAGCCCCAAAAA

Length

21 nucleotides

Bulged bases

9DP7|1|EC|U|6859, 9DP7|1|EC|C|6863, 9DP7|1|EC|A|6873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|EC|U|6854
9DP7|1|EC|A|6855
9DP7|1|EC|C|6856
9DP7|1|EC|C|6857
9DP7|1|EC|A|6858
9DP7|1|EC|U|6859
9DP7|1|EC|A|6860
9DP7|1|EC|G|6861
9DP7|1|EC|G|6862
9DP7|1|EC|C|6863
9DP7|1|EC|A|6864
9DP7|1|EC|G|6865
9DP7|1|EC|C|6866
9DP7|1|EC|C|6867
9DP7|1|EC|C|6868
9DP7|1|EC|C|6869
9DP7|1|EC|A|6870
9DP7|1|EC|A|6871
9DP7|1|EC|A|6872
9DP7|1|EC|A|6873
9DP7|1|EC|A|6874

Current chains

Chain EC

TSV IRES RNA

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BF

Rps5p

Chain BZ

Small ribosomal subunit protein eS25A