HL_9DP7_116

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUUUGGGCAAAG

Length

12 nucleotides

Bulged bases

9DP7|1|EC|U|6902

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|EC|C|6901
9DP7|1|EC|U|6902
9DP7|1|EC|U|6903
9DP7|1|EC|U|6904
9DP7|1|EC|G|6905
9DP7|1|EC|G|6906
9DP7|1|EC|G|6907
9DP7|1|EC|C|6908
9DP7|1|EC|A|6909
9DP7|1|EC|A|6910
9DP7|1|EC|A|6911
9DP7|1|EC|G|6912

Current chains

Chain EC

TSV IRES RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain Bf

RPS31 isoform 1