HL_9DPL_002
3D structure
- PDB id
- 9DPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LysRS bound to cellular modified tRNA-Lys3 and AIMP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACU(70U)UU(12A)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- 9DPL|1|C|U|33, 9DPL|1|C|70U|34, 9DPL|1|C|12A|37
- QA status
- Modified nucleotides: 70U, 12A, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DPL_002 not in the Motif Atlas
- Homologous match to HL_3KFU_005
- Geometric discrepancy: 0.2676
- The information below is about HL_3KFU_005
- Detailed Annotation
- tRNA anticodon loop with synthetase
- Broad Annotation
- Anticodon loop
- Motif group
- HL_69186.2
- Basepair signature
- cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
9DPL|1|C|A|31
9DPL|1|C|C|32
9DPL|1|C|U|33
9DPL|1|C|70U|34
9DPL|1|C|U|35
9DPL|1|C|U|36
9DPL|1|C|12A|37
9DPL|1|C|A|38
9DPL|1|C|PSU|39
Current chains
- Chain C
- tRNA-Lys3 (Cellular modified)
Nearby chains
- Chain A
- Lysine--tRNA ligase
Coloring options: