HL_9DPL_003

3D structure

PDB id

9DPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LysRS bound to cellular modified tRNA-Lys3 and AIMP2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(2MU)(PSU)CA(1MA)GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MU, PSU, 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DPL_003 not in the Motif Atlas

Homologous match to HL_4YCO_003

Geometric discrepancy: 0.0994

The information below is about HL_4YCO_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9DPL|1|C|G|53
9DPL|1|C|2MU|54
9DPL|1|C|PSU|55
9DPL|1|C|C|56
9DPL|1|C|A|57
9DPL|1|C|1MA|58
9DPL|1|C|G|59
9DPL|1|C|U|60
9DPL|1|C|C|61

Current chains

Chain C

tRNA-Lys3 (Cellular modified)

Nearby chains

Chain A

Lysine--tRNA ligase