HL_9DXL_003

3D structure

PDB id

9DXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RhoBAST RNA aptamer in complex with the SpyRho555 analogue, MaP555

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCAAGGUUAACC

Length

12 nucleotides

Bulged bases

9DXL|1|A|G|31, 9DXL|1|A|U|32, 9DXL|1|A|U|33

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74379.5

Basepair signature

cWW-F-F-cSS-cSS-F

Number of instances in this motif group

2

Unit IDs

9DXL|1|A|G|26
9DXL|1|A|C|27
9DXL|1|A|A|28
9DXL|1|A|A|29
9DXL|1|A|G|30
9DXL|1|A|G|31
9DXL|1|A|U|32
9DXL|1|A|U|33
9DXL|1|A|A|34
9DXL|1|A|A|35
9DXL|1|A|C|36
9DXL|1|A|C|37

Current chains

Chain A

RhoBAST aptamer

Nearby chains